Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s HindIII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_HindIII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6129105-SRR6129106-SRR6129107-SRR6129108/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  473,048,321
 Normal Paired: 249,374,424 (52.72%)
 Chimeric Paired: 197,946,840 (41.84%)
 Chimeric Ambiguous: 21,500,771 (4.55%)
 Unmapped: 4,226,286 (0.89%)
 Ligation Motif Present: 268,887,925 (56.84%)
Alignable (Normal+Chimeric Paired): 447,321,264 (94.56%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-16T05:00:57,196]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 297,444,528 (62.88%)
PCR Duplicates: 149,876,736 (31.68%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 508,170,705
Intra-fragment Reads: 39,027,182 (8.25% / 13.12%)
Below MAPQ Threshold: 38,903,026 (8.22% / 13.08%)
Hi-C Contacts: 219,514,320 (46.40% / 73.80%)
 Ligation Motif Present: 139,671,407  (29.53% / 46.96%)
 3' Bias (Long Range): 94% - 6%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 115,663,860  (24.45% / 38.89%)
Intra-chromosomal: 103,850,460  (21.95% / 34.91%)
Short Range (<20Kb): 54,493,267  (11.52% / 18.32%)
Long Range (>20Kb): 49,357,128  (10.43% / 16.59%)